category: Sequence - File Formatting
programs:
BLExtractSubset.py - Extract a subset of sequences from a GDE flatfile
clu2ig - Translate multiply aligned sequences in clustal format to Intelligenetics format
fromgb -
funnel - Reformats a free-format or FASTA-format file to a fixed line-length, preserving comments that begin with a semicolon (;)
numseq - Sequence dislpay and manipulation
readseq - Convert sequence files to other formats
uniqid.py - Encodes long names of sequences in a fasta file into short, unique numerical strings. Decodes file generated from encoded files, and restores original sequence names